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Inventory of the Harry F. Noller Papers
UA 43  
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Collection Contents

 

Box 1 [Manuscripts] 1979-1988

Physical Description: 16 folders
box-folder 1:1

Color Figures 16S 1988

box-folder 1:2

Graphic Configurations n.d.

box-folder 1:3

5S #2 - Figures n.d.

box-folder 1:4

5S II - Revised Manuscripts 1979

box-folder 1:5

Proven Helices 16S RNA 1979

box-folder 1:6

rRNA Chapter 1979

box-folder 1:7

Misc. Photos n.d.

box-folder 1:8

Spacer Sequence n.d.

box-folder 1:9

CHLP 1979

box-folder 1:10

IIº Structure Requests 1979

box-folder 1:11

Complete rrnB, promoter n.d.

box-folder 1:12

NAR II° - rough draft n.d.

box-folder 1:13

"Secondary Structure Model for Bacterial 16S Ribosomal RNA: Phylogenetic, Enzymatic and Chemical Evidence" [draft III] n.d.

box-folder 1:14

"Secondary Structure Model for Bacterial 16S Ribosomal RNA: Phylogenetic, Enzymatic and Chemical Evidence" [draft IV] n.d.

box-folder 1:15

II° Science - draft I (rough) n.d.

box-folder 1:16

16S II° Str. paper NAR - draft II n.d.

 

Box 2 [Manuscripts] 1977-1981

Physical Description: 14 folders
box-folder 2:1

"Secondary Structure Model for Bacterial 16S Ribosomal RNA: Phylogenetic, Enzymatic and Chemical Evidence" [draft V] n.d.

box-folder 2:2

"Secondary Structure Model for Bacterial 16S Ribosomal RNA: Phylogenetic, Enzymatic and Chemical Evidence" [final] n.d.

box-folder 2:3

"Introduction" Ribosomes are responsible for translation of the genetic code in all organisms." [draft II] n.d.

box-folder 2:4

A "bulged" double helix as a protein-RNA recognition site (5S RNA/protein L18/dimethyl sulfate/diethyl pyrocarbonate/cobra venom endonuclease/comparative sequence evidence) [drafts] n.d.

box-folder 2:5

"Secondary Structure Model for 23S Ribosomal RNA" [drafts] n.d.

box-folder 2:6

"Secondary Structure Model for 23S Ribosomal RNA" [final] 1981

box-folder 2:7

"Construction and Fine Mapping of Recombinant Plasmids Containing the rrnB Ribsomal RNA Operon of E. coli" 1981

box-folder 2:8

"Gene Organization and Primary Structure of a Ribosomal RNA Operon from Escherichia coli" [draft] n.d.

box-folder 2:9

"Gene Organization and Primary Structure of a Ribosomal RNA Operon from Escherichia coli" [final] n.d.

box-folder 2:10

A "bulged" double helix as a protein-RNA recognition site (5S RNA/ ribosomal protein L18/ chemical modification/ ribonuclease digestion/comparative sequence evidence) [3rd draft] n.d.

box-folder 2:11

A "bulged" double helix as a protein-RNA recognition site (5S RNA/ ribosomal protein L18/ chemical modification/ ribonuclease digestion/comparative sequence evidence) [4th draft] n.d.

box-folder 2:12

IIº Science - final/correspondence, pt, 1 of 2 n.d.

box-folder 2:13

IIº Science - final/correspondence, pt. 2 0f 2 n.d.

box-folder 2:14

"Secondary Structure Model for 23S Ribosomal RNA" [corrections] 1981

 

Box 3 [Manuscripts] 1978-1980

Physical Description: 23 folders
box-folder 3:1

Harry's gel readings 1977-1978

box-folder 3:2

"Complete nucleotide sequence of a 23S ribosomal RNA gene from Escherichia coli" 1979

box-folder 3:3

Operon sequence and restr. sites n.d.

box-folder 3:4

Coli Ti catalog n.d.

box-folder 3:5

"Construction and Fine Mapping of Recombinant Plasmids Containing the rrnB Ribosomal RNA Operon of E. coli" n.d.

box-folder 3:6

rif d/8 map n.d.

box-folder 3:7

R-protein sequence talk n.d.

box-folder 3:8

16S/23S IIº models 1981

box-folder 3:9

"Secondary Structure Model for 23S Ribosomal RNA" [draft I] n.d

box-folder 3:10

"Secondary Structure Model for 23S Ribosomal RNA" [draft II] n.d.

box-folder 3:11

"Secondary Structure Model for 23S Ribosomal RNA" [draft III] n.d.

box-folder 3:12

"Secondary Structure Model for 23S Ribosomal RNA" [figures] n.d.

box-folder 3:13

IIº Str. Figs. - NAR [contains negatives] n.d.

box-folder 3:14

"Construction and Fine Mapping of Recombinant Plasmids Containing the rrnB Ribosomal RNA Operon of E. coli" 1980

box-folder 3:15

"Secondary Structure of 16S Ribosomal RNA - Implications for structure, function and evolution of ribosomes" n.d.

box-folder 3:16

"Structure of 5S RNA and its complexes with Proteins L18 and L25 from Escherichia coli: A Chemical Modification Study" 1980

box-folder 3:17

IIº Science paper - Figs. n.d.

box-folder 3:18

"Structure and role of 5S RNA - protein complexes in protein biosynthesis" n.d.

box-folder 3:19

"RNA-Protein Crosslinking in E. coli Ribosomes: 4-Azidophenylglyoxal, a novel Heterobifunctional Reagent" 1980

box-folder 3:20

457/78 "Protection of Specific Sites in 23S and 5S RNA from Chemical Modification by Association of 30S and 50S Ribosomes" 457/78 "The Mechanism of Ribosomal Subunit Association" 1978-1979

box-folder 3:21

"The Ribosomal S4-RNA Fragment Melts Cooperatively When Complexed With Protein S4" [final] 1978

box-folder 3:22

"Structure and Topography of Ribosomal RNA" [rough draft] n.d.

box-folder 3:23

"The Structure of the RNA Binding Site of Ribosomal Proteins S8 and S15" 1978

 

Box 4 [Lab Notebooks] 1971-1975

Physical Description: 3 folders
box-folder 4:1

Atchison, Rob: I-II-71, VI-71, I-I-73, VII-74, II-VII-74, X-74 Methods 1971-1974

box-folder 4:2

Broome, Stephanie: I-X-73, III-74 1973

box-folder 4:3

Chapman, Nora: I-X-73, IV-75, V-75, VII-75 1973-1975

 

Box 5 [Lab Notebooks] 1973-1976

Physical Description: 2 folders
box-folder 5:1

Breitmeyer, Jim: II-05/01/74, 01/06/74, III-01/07/75, 05/05/75, IV-05/07/75 1974-1975

box-folder 5:2

Herr, Winship: I-06/20/73, 08/07/73, II-08/06/73, 11/06/73, III-11/01/73, 02/07/74, IV-02/13/74, 07/04/74, V-07/06/74, 06/21/76 1973-1976

 

Box 6 [Lab Notebooks] 1970-1975

Physical Description: 2 folders
box-folder 6:1

Moran, Mark: I-I-71, II-71, II-III-71, V-71, III-V-71, VIII-71, IV-VIII-71, IX-72 1971-1972

box-folder 6:2

Noller, Harry: III-X-70, I-71, IV-I-71, III-71, V-III-71, X-71, VII-VI-72, VIII-72, VIII-VIII-72, XII-72, X-V-73 1970-1975

 

Box 7 [Notebooks & Reprints] 1965-1973

Physical Description: 13 folders
box-folder 7:1

Noller, Harry: IX-73, XI-IX-73, II-74, XII-II-74, IX-74, XIII-IX-74, VIII-75, XIV-VIII-75, IX-75 n.d.

box-folder 7:2

Noller's "Instruction Publique Geneve" notebook [TK 307#1, TK 307#2] 1969-1970

box-folder 7:3

Noller's "Instruction Publique Geneve" notebook [Methods] 1969-1970

box-folder 7:4

Noller's "Instruction Publique Geneve" notebook [³H-Me Expts I VI-69 to V-70] 1969-1970

box-folder 7:5

Noller's "Instruction Publique Geneve" notebook [Literature] 1969-70

box-folder 7:6

Noller's "Instruction Publique Geneve" notebook [³H-Me Rib II V-70 to X-70] 1970

box-folder 7:7

Bernhard, Lau, & Noller - "Spectrophometric Identification of Acyl Enzyme Intermediates" - Biochemistry 4, 1108 1965

box-folder 7:8

"Ribosomal Proteins of Escherichia coli, I. Demonstration of Different Primary Structures" [Traut, Morre, Delius, Noller, Tissieres] - Proceedings of the National Academy of Sciences, v.57, No. 5, pp.1294-1301 1967

box-folder 7:9

"Amino-Acid Sequence of Glyceraldehyde 3-Phosphate Dehydrogenase from Lobster Muscle" [Davidson, Sajgo, Noller, Harris] - Nature, Vol. 216, No. 5121, pp. 1181-1185, December 23, 1967 1967

box-folder 7:10

"Ribosomal Proteins of Escherchia coli. II. Proteins from the 30s Subunit" [Moore, Traut, Noller, Pearson, Delius] - Journal of Molecular Biology, v.31 pp. 441-461 1968

box-folder 7:11

"Studies on Purified E. Coli Ribosomal Proteins" - Molecular Genetics, 1968 [Delius, Traut, Moore, Noller, Pearson]; 4. Wissenschaftliche Konferenz der Gesellschaft Deutscher Naturforscher und Arzte. Berlin 1967 1968

box-folder 7:12

"Functional Modification of 16S Ribosomal RNA by Kethoxal" [Noller and Chaires] - Proceedings of the National Academy of Sciences, v.69:11, pp. 3115-3118 1972

box-folder 7:13

"Use of Protection of 30S Ribosomal Proteins by tRNA for Functional Mapping of the E. coli Ribosome" [Rummell and Noller] - Nature New Biology, v.245:142, pp.72-75 1973

 

Box 8 [Reprints] 1973-1983

Physical Description: 37 folders
box-folder 8:1

"The Presence of an Exonuclease in Highly Purified DNA Polymerase from Bakers' Yeast" [Helfman] - European Journal of Biochemistry, v. 32, pp.42-50 1973

box-folder 8:2

"Topography of 16S RNA in 30S Ribosomal Subunits. Nucleotide Sequences and Location of Sites of Reaction with Kethoxal" [Noller] - Biochemistry, v.13, p.4694 1974

box-folder 8:3

"Accessibility of 5 S RNA in 50 S Ribosomal Subunits" [Noller and Herr] - Journal of Molecular Biology, v.90, pp.181-184 1974

box-folder 8:4

"Nucleotide Sequence of the 3' Terminus of E. coli 16S Ribosomal RNA" [Noller and Herr] - Molecular Biology Reports, v.1, pp.437-439 1974

box-folder 8:5

"Identification of a Ribosomal Protein Essential for Peptidyl Transferase Activity" [Moore et al.] - Proceedings of the National Academy of Science, v.72:3, pp.844-848 1975

box-folder 8:6

"Complete nucleotide sequence of a 16S ribosomal RNA gene from Esherichia coli" [Brosius, Palmer, Kennedy, Noller] - Proceedings of the National Academy of Science, v.75:10, pp.4801-4805 1978

box-folder 8:7

"Nucleotide Sequences of Accessible Regions of 23S RNA in 50S Ribosomal Subunits" [Herr and Noller] - Biochemistry, v.17, p.307 1978

box-folder 8:8

"Alteration of 5S RNA conformation by ribosomal proteins L18 and L25" [Bear, Schleich, Noller, Garrett] - Nucleic Acids Research, v.4:7 1977

box-folder 8:9

"Protection of Specific Sites in 16S RNA from Chemical Modification by Association of 30S and 50S Ribosomes" [Chapman and Noller] - Journal of Molecular Biology, v.109 1977

box-folder 8:10

"Affinity Labeling of Specific Regions of 23 S RNA by Reaction of N-bromoacetyl-phenylalanyl-transfer RNA with Escherichia coli Ribosomes" [Breitmeyer and Noller] - Journal of Molecular Biology, v.101 1976

box-folder 8:11

"A Fragment of 23S RNA Containing a Nucleotide Sequence Complementary to a Region of 5S RNA" [Herr and Noller] - FEBS Letters, v.53:2 1975

box-folder 8:12

"Identification of Proteins Functionally Altered by Chemical Modification of the Transfer RNA and Polyuridylic Acid Binding Sites of 30S Ribosomal Subunits" [Thomas, Sweeney, Chang, Noller] - Journal of Molecular Biology, v.95, pp.91-102 1975

box-folder 8:13

"Isolation and Rstriction Mapping of Plasmids Containing Ribosomal DNA Sequences From the rrn B Cistron of E. Coli" [Palmer, Raker, Kennedy, Young, Barnes, Rodriguez, Noller] - Molecular and General Genetics, v.172, pp.171-178 1979

box-folder 8:14

"Mechanism of Ribosomal Subunit Association: Discrimination of Specific Sites in 16 S RNA Essential for Association Activity" [Herr, Chapman, Noller] - Journal of Molecular Biology, v.130, pp.433-449 1979

box-folder 8:15

"Altered Topography of 16S RNA in the Inactive Form of Escherichia coli 30S Ribosomal Subunits" [Hogan and Noller] - Biochemistry, v.17, p.587 1978

box-folder 8:16

"Structure of 5 S Ribosomal RNA from Escherichia coli: Identification of Kethoxal-reactive Sites in the A and B Conformations" [Noller and Garrett] - Journal of Molecular Biology, v.132, pp.621-636 1979

box-folder 8:17

"Structures of Complexes of 5S RNA with Ribosomal Proteins L5, L18 and L25 from Escherichia coli: Identification of Kethoxal-reactive Sites on the 5S RNA" [Garrett and Noller] - Journal of Molecular Biology, v.132, pp.637-648 1979

box-folder 8:18

"The Ribosomal S4-RNA Fragment Melts Cooperativbely When Complexed with Protein S4" [Bear, Schleich, Noller, Douthwaite, and Garrett] - FEBS Letters, v.100:1, pp.99-102 1979

box-folder 8:19

"The Structure of the RNA Binding Site of Ribosomal Proteins S8 and S15" [Müller, Garrett, and Noller] - Journal of Biological Chemistry, v.254:10, pp.3873-3878 1979

box-folder 8:20

"Protection of Specific Sites in 23S and 5S RNA from Chemical Modification by Association of 30S and 50S Ribosomes" [Herr and Noller] - Journal of Molecular Biology, v.130, pp.421-432 1979

box-folder 8:21

"Complete nucleotide sequence of a 23S ribosomal RNA gene from Escherichia coli" [Brosius, Dull, and Noller] - Proceedings of the National Academy of Sciences, v.77:1, pp.201-204 1980

box-folder 8:22

"Secondary structure model for bacterial 16S ribosomal RNA: phylogenetic, enzymatic and chemical evidence" [Woeses, Magrum, Gupta, Siegel, Stahl, Kop, Crawford, Brosius, Gutell, Hogan and Noller] - Nucleic Acids Research, v.8:10 1980

box-folder 8:23

"Ribonucleic Acid-Protein Cross-Linking in Esherichia coli Ribosomes: (4-Azidophenyl)glyoxal, a Novel Heterobifunctional Reagent" [Politz, Noller, and McWhirter] - Biochemistry, v.20, pp.372-37 1981

box-folder 8:24

"Structure and role of 5S RNA-protein complexes in protein biosynthesis" [Garrett, Douthwaite, and Noller] - Trends in Biochemical Sciences, v.6:5, pp.137-139 1981

box-folder 8:25

"Gene Organization and Primary Structure of a Ribosomal RNA Operon from Esherichia coli" [Brosius, Dull, Sleeter, and Noller] - Journal of Molecular Biology, v.148, pp.107-127 1981

box-folder 8:26

"Construction and Fine Mapping of Recombinant Plasmids Containing the rrnB Ribosomal RNA Operon of E. coli" [Brosius, Ullrich, Raker, Gray, Dull, Gutell, and Noller] - Plasmid, v.6, pp.112-118 1981

box-folder 8:27

"A 'Bulged' Double helix in a RNA-protein contact site" [Peattie, Douthwaite, Garrett, and Noller] - Proceedings of the National Academy of Sciences, v.57:12, pp.7331-7335 1981

box-folder 8:28

"Secondary Structure of 16S Ribosomal RNA" [Noller and Woese] - Science, v.212, pp.403-411 1981

box-folder 8:29

"Secondary Structure of 23S Ribosomal RNA" [Noller, Kop, Wheaton, Brosius, Gutell, Kopylov, Dohme, Herr, Stahl, Gupta, and Woese] - Nucleic Acids Research, v.9:22 1981

box-folder 8:30

"Controlling ribosomal 5S RNA synthesis: further dual nucleic acid-binding proteins" [Garrett and Noller] - Trends in Biochemical Sciences, v.7:9, pp.309-310 1982

box-folder 8:31

"DNA sequences flanking an E. coli insertion element IS2 in a cloned yeast TRP5 gene" [Brosius and Walz] - Gene, v.17, pp.223-228 1982

box-folder 8:32

"Identification of a site of psoralen crosslinking in E. coli 16S ribosomal RNA" [Turner, Thompson, Hearst, and Noller] - Nucleic Acids Research, v.10:9 1982

box-folder 8:33

"Structure and Function of Ribosomal RNA", typescript for Horizons in Biochemistry (Cf. 8:35) [Noller and Von Knippenberg] [1982]

box-folder 8:34

"Ribonucleic Acid-Protein Cross-Linking within the Intact Escherichia coli Ribosome, Utilizing Ethylene Glycol Bis[3-(2-ketobutyraldehyde) ether], a Reversible, Bifunctional Reagent: synthesis and Cross-Linking within 30S and 50S Subunits" [Brewer, Goelz, and Noller] - Biochemistry, v.22, pp.4303-4309 1983

box-folder 8:35

"Structure and Function of Ribosomal RNA" [Noller and Von Knippenberg] - Horizons in Biochemistry 1983

box-folder 8:36

"Identification of Sites of 4'-(Hydroxymethyl)-4, 5', 8-trimethylpsoralen Cross-Linking in Escherchia coli 23S Ribosomal Ribonucleic Acid" [Turner and Noller] - Biochemistry, v.22, pp.4159-4164 1983

box-folder 8:37

"Detailed Analysis of the Higher-Order Structure of 16S-Like Ribosomal Ribonucleic Acids" [Woese et al.] - Microbiology Reviews, v.47:4, pp.621-669 1983

 

Box 9 [Reprints] 1983-1984

Physical Description: 9 folders
box-folder 9:1

"Protection of Ribosomal RNA from Kethoxal in Polyribosomes: Implication of Specific Sites in Ribosome Function" [Brow and Noller] - Journal of Molecular Biology, v.163, pp.27-46 1983

box-folder 9:2

"Ribonucleic Acid-Protein Cross-Linking within the Intact Escherichia coli Ribosome, Utilizing Ethylene Glycol Bis[3-(2-ketobutyraldehyde) ether], a Reversible, Bifunctional Reagent: Identification of 30S Proteins" [Brewer and Noller] - Biochemistry, v.22, pp.4310-4315 1983

box-folder 9:3

"The Nucleotide Sequence of a Rat 18 S Ribosomal Ribonucleic Acid Gene and a Proposal for the Secondary Structure of 18 S Ribosomal Ribonucleic Acid" [Chan, Gutell, Noller, and Wool] - Journal of Biological Chemistry, v.259:1, pp.224-230 1984

box-folder 9:4

"Probing the Structure of 16 S Ribosomal RNA from Bacillus brevis" [Kop, Kopylov, Magrum, Siegel,Gupta, Woese, and Noller] - Journal of Biological Chemistry, v.259:24, pp.15287-15293 1984

box-folder 9:5

"Identification of a 16S rRNA sequence crosslinked to ribosomal proteins by (4-azidophenyl)glyoxal" [Zagorska, Politz, Nambu, Austere, and Noller], [manuscript] 1984

box-folder 9:6

"Ribosome Structure and Function: Localization of rRNA" [Noller and Lake] 1984

box-folder 9:7

"Ribosome Structure and Function: Localization of rRNA" [Noller and Lake]- Membrane Structure and Function, Vol. 6, Chapter 5 1984

box-folder 9:8

"The Conserved 5 S rRNA Complement to tRNA Is Not Required for Translation of Natural mRNA" [Zagorska, van Duin, Noller, Pace, Johnson, and Pace] - Journal of Biological Chemistry, v.259:5, pp.2798-2802 1984

box-folder 9:9

"Structure of Ribosomal RNA" [Noller] - Annual Review of Biochemistry, v.53, pp.119-162 1984

box-folder 9:10

"Probing the Conformation of 18S rRNA in Yeast 40S Ribosomal Subunits with Kethoxal" [Hogan, Gutell, and Noller] - Biochemistry, v.23, pp.3322-3330 1984

 

Box 10 [Reprints] 1984-1990

Physical Description: 9 folders
box-folder 10:1

"Probing the Conformation of 26S rRNA in Yeast 60S Ribosomal Subunits with Kethoxal" [Hogan et al.] - Biochemistry, v.23, pp.3330-3335 1984

box-folder 10:2

"Complete Nucleotide Sequence of a Gene from Bacillus stearothermophilus" [Kop, Wheaton , Gupta, Woese, and Noller] - [mss] 1984

box-folder 10:3

"Complete Nucleotide Sequence of a Gene from Bacillus stearothermophilus" [Kop, Wheaton , Gupta, Woese, and Noller] - DNA, v.3:5 1984

box-folder 10:4

"Chemical Probing of Conformation in Large RNA Molecules", Journal of Molecular Biology, v.180, pp.151-177 1984

box-folder 10:5

"Further characterization of the extremely small mitochondrial ribosomal RNAs from trypanosomes: a detailed comparison of the 9S and 12S RNAs from Crithidia fasciculate and Trypanosoma brucei with rRNAs from other organisms" [Sloof, van den Burg, Voogd, Benne, Agostinelli, Borst, Gutell, and Noller] - Nucleic Acids Research, v.13:11, pp.4171-4190 1985

box-folder 10:6

"Identification of a site on 23S ribosomal RNA located at the peptidyl transferase center", Proceedings of the National Academy of Sciences, v.81, pp.3607-3611 1984

box-folder 10:7

"A Model for Stabilization of Codon-Anticodon Interaction by Ribosomal RNA" [Noller] - [mss] [1985]

box-folder 10:8

"Induced Coaxial Stacking: A Model for Stabilization of Codon-Anticodon Interaction by Ribosomal RNA" [Noller and Gutell] - [mss] 1985

box-folder 10:9

"The Structure of Ribosomal RNA and its Functional Interactions in Translation" [Noller, Moazed, Stern, Powers, Allen, Robertson, Weiser, and Triman] - [original ms; Chapter 3 of "the ribosome book"] 1989-1990

 

Box 11 [Reprints] 1985-1990

Physical Description: 7 folders
box-folder 11:1

"The Structure of Ribosomal RNA and its Functional Interactions in Translation" [Noller, Moazed, Stern, Powers, Allen, Robertson, Weiser, and Triman] - [mss] 1989-1990

box-folder 11:2

"Evidence for functional interaction between domains II and V of 23S ribosomal RNA from an erythromycin-resistant mutant" [Douthwaite, Prince, and Noller] - Proceedings of the National Academy of Science, v.82, pp.8330-8334 1985

box-folder 11:3

"Studies on the structure and function of 16S ribosomal RNA using structure-specific chemical probes" [Noller, Van Stolk, Moazed, Douthwaite, and Gutell] - Journal of Biosciences, v.8:3-4, pp.747-755 1985

box-folder 11:4

"Studies on the Structure and Function of Ribosomal RNA" [Noller, Asire, Barta, Douthwaite, Gutell, Moazed, Normanly, Prince, Stern, Triman, Turner, Van Stolk, Wheaton, Weiser, and Woese] - Chapter 9 of Hardesty/Kramer, Structure, Function, and Genetics of Ribosomes 1986

box-folder 11:5

"Interconversion of Active and Inactive 30 S Ribosomal Subunits is Accompanied by a Conformational Change in the Decoding Region of 16 S rRNA" [Moazed, Van Stolk, Douthwaite, and Noller] - Journal of Molecular Biology, v.191 pp.483-493 1986

box-folder 11:6

"Rapid Chemical Probing of Conformation in 16 S Ribosomal RNA and 30 S Ribosomal Subunits Using Primer Extension" [Moazed, Stern, and Noller] - Journal of Molecular Biology, v.187 1986

box-folder 11:7

"Transfer RNA Shields Specific Nucleotides in 16S Ribosomal RNA From Attack by Chemical Probes" [Moazed and Noller] - Cell, v.47, pp.985-994 1986

 

Box 12 [Reprints] 1986-1988

Physical Description: 6 folders
box-folder 12:1

"Localization of the Binding Site for Protein S4 on 16 S Ribosomal RNA by Chemical and Enzymatic Probing and Primer Extension" [Stern, Wilson, and Noller] - Journal of Molecular Biology, v.192, pp.101-110 1986

box-folder 12:2

"Higher order structure in ribosomal RNA" [Gutell, Noller, and Woese] - The EMBO Journal, v.5:5, pp.1111-1113 [European Molecular Biology Organization] 1986

box-folder 12:3

"Interaction of Ribosomal Proteins S5, S6, S11, S12, S18 and S21 with 16 S rRNA" [Stern, Powers, Changchien, and Noller] - Journal of Molecular Biology, v.201 1988

box-folder 12:4

"Interaction of Proteins S16, S17 and S20 with 16S Ribosomal RNA" [Stern, Changchien, Craven, and Noller] - Journal of Molecular Biology, v.187, pp.399-416 1987

box-folder 12:5

"Interaction of Ribosomal Proteins S6, S8, S15 and S18 with the Central Domain of 16S Ribosomal RNA" [Svensson, Changchien, Craven, and Noller] 1987

box-folder 12:6

"Interaction of antibiotics with functional sites in 16S ribosomal RNA", Nature, v.327:6121, pp.389-394 1987

 

Box 13 [Manuscripts & Reprints] 1987-1988

Physical Description: 10 folders
box-folder 13:1-2

"Chloramphenical, Erythomycin, Carbomycin & Vernamycin B Protect Overlapping Sites in the Peptidyl Transferase Region of 23S Ribosomal RNA" [Moazed and Noller] - Biochemie, v.69, pp.879-884 1987

box-folder 13:1

[Manuscripts and revisions] 1987

box-folder 13:2

[Reprints] 1987

box-folder 13:3-4

"Molecular Architecture and Assembly of Ribosomes" [to be published in] Eschenchia Coli & Salmonella Typhimurium: Cellular & Molecular Biology, chapter 9, American Society for Microbiology 1987

box-folder 13:3

[Manuscripts] 1987

box-folder 13:4

[Revisions] 1987

box-folder 13:5

"Analysis of RNA Structure Using Chemical and Enzymatic Probing Monitored by Primer Extension" [Stern, Moazed and Noller] - Methods in Enzymology, v.164 (?) 1987

box-folder 13:6

"Studies on the Architecture and Function of 16S Ribosomal RNA" [Noller, Stern, Moazed, Powers, Svensson and Chanchien] - Cold Spring Harbor Symposium, Quantum Biology, v.52: 695-708 1987

box-folder 13:7

"Probing the Assembly of the 3' Major Domain of 16S Ribosomal RNA. Quaternary Interactions Involving Ribosomal Proteins S7, S9, and S19" [Powers, Changchien, Craven and Noller] - Journal of Molecular Biology, v.200 pp. 309-319 1987

box-folder 13:8

"Use of RNA - DNA Hybridization to Facilitate Chemical Probing of Large RNA Molecules" [Van Stolk and Noller] - Methods of Enzymology, v.164 1988

box-folder 13:9-10

"A Model for the Three-Dimensional Folding of 16S Ribosome RNA", Journal of Molecular Biology, v.204 1988

box-folder 13:9

[Manuscripts] 1988

box-folder 13:10

[Revisions] 1988

 

Box 14 [Manuscripts & Reprints] 1988-1990

Physical Description: 11 folders
box-folder 14:1-2

"A Model for the Three-Dimensional Folding of 16S Ribosome RNA" [Stern, Weiser, and Noller] - Journal of Molecular Biology, v.204, pp.447-481 1988

box-folder 14:3-4

"Mutations in 16S Ribosomal RNA Disrupt Antibiotic - RNA Interactions" [De Stasio, Moazed, Noller, and Dahlberg] - The EMBO Journal, v.8:4, pp.1213-1216 [European Molecular Biology Organization] 1988

box-folder 14:3

[Manuscripts & Revisions] 1989

box-folder 14:4

[Reprints] 1989

box-folder 14:5

"Interaction of Elongation Factors EF-G & EF-Tu with a Conserved Loop in 23S Ribosomal RNA" [Moazed, Robertson, and Noller] - Nature, v.334, pp.362-364 1988

box-folder 14:6

"Probing the Assembly of the 3' Major Domain of 16S rRNA. Interactions Involving Ribosomal Proteins S2, S3, S10, S13 and S14" [Powers, Stern, Changchien, Noller] - Journal of Molecular Biology, v.201:4, pp.697-716 1988

box-folder 14:7

"Dominant Lethal Mutations in the 16S rRNA loop Containing Nucleotide 530" [Powers and Noller] - Proceedings of the National Academy of Science, v.87, pp.1942-1046 1990

box-folder 14:8-10

"RNA - Protein Interactions in 30S Ribosomal Subunits: Folding and Function of 16S rRNA" [Stern, Powers, Changchien, and Noller] - Science, v.244, pp.783-790 1989

box-folder 14:8

[Manuscripts] 1989

box-folder 14:9

[Revisions] 1989

box-folder 14:10

[Reprints] 1989

box-folder 14:11

"Exploring the Architecture & Function of Ribosomal RNA - The Heart of An Ancient Molecular Machine" [Noller] [Mss & Figures] 1989

 

Box 15 [Manuscripts & Reprints] 1989-1990

Physical Description: 11 folders
box-folder 15:1-2

"Intermediate States in the Movement of Transfer RNA in the Ribosome" [Moazed and Noller] - Nature, v.342, pp.142-148 1989

box-folder 15:1

[Manuscripts] 1989

box-folder 15:2

[Revisions] 1989

box-folder 15:3-5

"Binding of tRNA to the Ribosomal A and P Sites Protects Two Distinct Sets of Nucleotides in16S rRna" [Moazed and Noller] - Journal of Molecular Biology, v.211, pp.135-145 1990

box-folder 15:3

[Manuscripts] 1990

box-folder 15:4

[Corrected versions] 1990

box-folder 15:5

[Reprints] 1990

box-folder 15:6-7

"Interaction of tRNA with 23S rRNA in the Ribosomal A, P, and E sites" [Moazed and Noller] - Cell, v.57, pp.585-597 1989

box-folder 15:6

[Manuscripts with corrections] 1989

box-folder 15:7

[Reprints] 1989

box-folder 15:8-9

"Mutations in Ribosomal Proteins S4 and S12 Influence the Higher Order Structure of 16S Ribosomal RNA" [Allen and Noller] - Journal of Molecular Biology, v.208, pp.467-468 1989

box-folder 15:8

[Manuscripts with corrections] 1989

box-folder 15:9

[Reprints] 1989

box-folder 15:10-11

"Defining the Structural Requirements for a Helix in 23S Ribosomal RNA that Confers Erythromycin Resistance" [Douthwaite, Powers, Lee and Noller] - Journal of Molecular Biology, v.209, pp.655-665 1989

box-folder 15:10

[Manuscripts with corrections] 1989

box-folder 15:11

[Reprints] 1989

 

Box 16 [Articles, Manuscripts & Reprints] 1990-1993

Physical Description: 10 folders
box-folder 16:1-2

"Sites of Interaction of the CCa End of Peptidyl - tRNA with 23S rRNA" [Moazed and Noller] - Proceedings of the National Academy of Science, v.88, pp.3725-3728 1991

box-folder 16:1

[Manuscripts with corrections] 1991

box-folder 16:2

[Reprints] 1991

box-folder 16:3-4

"Single Base Alterations Upstream of the E. coli 16S rRNA Coding Region Result in Temperature-sensitive 16S rRNA Expression" [Mori, Dammel, Becker, Riman and Noller] - Biochimica et Biophysica Acta, v.1050, pp.323-327 1990

box-folder 16:3

{Manuscripts and corrected version] 1990

box-folder 16:4

[Reprints] 1990

box-folder 16:5

"A Single Base Substitution in 16SRibosomal RNA Suppresses Streptomycin Dependence and Increases the Frequency of Translational Errors" [Allen and Noller] 1991

box-folder 16:6

"Molecular basis of Tetracycline Action: Identification of Analogs Whose Primary Target Is Not the Bacterial Ribosome" [Rasmussen, Noller, Daubresse, Oliva, Misulovin, Rothstein, Ellestad, Gluzman, Tally, and Chopra] - Antimicrobial Agents and Chemotherapy, v.35:11, pp.2306-2311 1991

box-folder 16:7

"Drugs and the RNA World" - Nature, v.353, pp.302-303 1991

box-folder 16:8

"Ribosomal RNA and Translation" [Noller] - Annual Review of Biochemistry, v.60, pp.191-227 1991

box-folder 16:9

"Allele-specific structure probing of plasmid-derived 16S ribosomal RNA from Escherichia coli" [Powers and Noller] - Gene, v.123, pp.75-80 1993

box-folder 16:10

"Selective perturbation of G530 of 16S rRNA by translational miscoding agents and a streptomycin dependence mutation in protein S12" [Powers and Noller] 1993

 

Box 17 [Articles, Manuscripts & Reprints] 1989-1993

Physical Description: 7 folders
box-folder 17:1

"Isolation of Temperature-sensitive Mutants of 16 S rRNA in Escherichia coli" [Triman, Becker, Dammel, Katz, Mori, Douthwaite, Yapijakis, Yoast, and Noller] - Journal of Molecular Biology, v.209, pp.645-653 1989

box-folder 17:2

"Sequence similarities between cell regulation factors, heat shock proteins and RNA helicases" [Article by Mian] 1992

box-folder 17:3

"rRNA and Translation" [Noller, Powers, Allen, Moazed, and Stern] 1992

box-folder 17:4

"Cleavage of tRNA by Fe(II)-Bleomycin" [Hüttenhofer, Hudson, Noller, and Mascharak] - Journal of Biological Chemistry, v.267:34, pp.24471-24475 1992

box-folder 17:5

"Stgrep: A language for performing symbolic computation on RNA sequences and secondary structures" [Macke, Mian, Cohen, and Noller] [Manuscripts] 1992

box-folder 17:6

"Aminoacyl Esterase Activity of the Tetrahymena Ribozyme" [Piccirilli, McConnell, Zaug, Noller, and Cech] - Science, v.256, pp.1420-1424 1992

box-folder 17:7

"A cold-sensitive mutation in 16S rRNA provides evidence for helical switching in ribosome assembly" [Dammel and Noller] - Genes & Development, v.7, pp.660-670 1993

 

Box 18 [Articles, Manuscripts & Reprints] 1992-1996

Physical Description: 8 folders
box-folder 18:1

"A cold-sensitive mutation in 16S rRNA provides evidence for helical switching in ribosome assembly" [Dammel and Noller] 1993

box-folder 18:2

"Hybrid States of tRNA During Translation" [Noller and Moazed] - Nucleic Acids and Molecular Biology, v.7, ed. by F. Eckstein and D.M.J.Lilley 1993

box-folder 18:3

"On the Origin of the Ribosome: Co-Evolution of Sub-Domians of tRNA and rRNA" [Noller] [Gesteland and Atkins (eds.): The RNA World - Cold Spring Harbor. Laboratory Press, New York 1993] 1992-1994

box-folder 18:4

"tRNA-rRNA interactions and peptidyl transferase" [Noller] [Chapter for the official publication of the Federation of American Societies for Experimental Biology] 1992-1993

box-folder 18:5

"How I Got Into Ribosomes: Geneva in the 60's" [Noller] [Manuscript: biographical item for a Tissieres Festscrift] 1992

box-folder 18:6

[Manuscript: Title unclear, re Methylation Interference, "Uwe's ms"] [Von Ahsen and Noller] 1993

box-folder 18:7-8

"rRna and Translation : tRNA Selection and Movement in the Ribosome" [Noller, Powers, Allen, Moazed, and Stern] - [Ch.11 in Ribosomal RNA: Structure, Evolution, Processing, and Function in Protein Biosynthesis, eds. Zimmermann and Dahlberg] 1992-1996

box-folder 18:7

[Reprints] 1995-1996

box-folder 18:8

[Manuscripts] 1992-1994

 

Box 19 [Articles, Manuscripts & Reprints] 1991-1994

Physical Description: 9 folders
box-folder 19:1

"A Functional Pseudoknot in 16S Ribosomal RNA" [Powers and Noller] - The EMBO Journal, v.10:8 [European Molecular Biology Organization] 1991

box-folder 19:2

"Interaction of Antibiotics with A- and P-site-specific bases in 16S ribosomal RNA" [Woodcock, Moazed, Cannon, Davies, and Noller] - The EMBO Journal, v.10:10, pp.3099-3103 [European Molecular Biology Organization] 1991

box-folder 19:3

"Evidence for functional interaction between elongation factor Tu and 16S ribosomal RNA" [Powers and Noller] - Proceedings of the National Academy of Science, v.90, pp.1364-1368 1993

box-folder 19:4

"Dynamics of In Vitro Assembly of 16S rRNA into 30S Ribosomal Subunits" [Powers, Daubresse, and Noller] - Journal of Molecular Biology, v.232, pp.362-374 1993

box-folder 19:5

"Hydroxyl radical cleavage of tRNA in the ribosomal P site" [Hüttenhofer and Noller] - Proceedings of the National Academy of Sciences, v.89, pp.7851-7855 1992

box-folder 19:6

"RNA Modeling Using Gibbs Sampling and Stochastic Context Free Grammars" [Grate, Herbster, Hughey, Mian, Noller, and Haussler] [Manuscript] 1994

box-folder 19:7

"Phylogenetic comparative chemical footprint analysis of the interaction between ribonuclease P RNA and tRNA" [LaGrandeur, Hüttenhofer, Noller, and Pace- The EMBO Journal, v.13:17, pp.3945-3952 [European Molecular Biology Organization] 1994

box-folder 19:8

"Constraint Satisfaction Techniques for Modeling Large Complexes: Application to Central Domain of the 16S Ribosomal Subunit" [Altman, Weiser, and Noller] [Manuscript] 1994

box-folder 19:9

"XRNA: User Commands" Rev. 1.0 April 1994 [Weiser Manuscript] 1994

 

Box 20 [Articles, Manuscripts, Models & Reprints] 1993-1995

Physical Description: 8 folders
box-folder 20:1

"Minireview: Peptidyl Transferase: Protein, Ribonucleoprotein, or RNA?" [Noller] - Journal of Bacteriology, Sept. 1993, pp.5297-5300 1993

box-folder 20:2

Footprinting the Sites of Interaction of Antibiotics with Catalytic Group I Intron RNA" [Manuscripts] - Science 1993

box-folder 20:3-4

"Footprinting mRNA - ribosome complexes with chemical probes" [Hüttenhofer] - The EMBO Journal, v.13:16, pp.3892-3901 1994

box-folder 20:3

[Manuscripts] 1994

box-folder 20:4

[Research Material] 1994

box-folder 20:5

"Base-pairing between C74 of tRNA and G2252 of 23S rRNA is critical for peptidyl transferase activity" [Green and Noller] [Manuscript] 1995

box-folder 20:6

"Ribosomes and Translation of the Genetic Code" [Noller] ["Attardi Chapter"] for Frontiere della Biologia 1995

box-folder 20:7

"30S Model" n.d.

box-folder 20:8

"Micro Revs" n.d.

 

Box 21 [Manuscripts & Reprints] 1994-1996

Physical Description: 6 folders
box-folder 21:1

"Structure and Function of Ribosomal RNA" [Noller, Green, Heilek, Hoffarth, Huttenhofer, Joseph, Lee, Lieberman, Mankin, Merryman, Powers, Puglisi, Samaha, and Weiser] - Biochemistry and Cell Biology, v.73, pp.997-1009 1995

box-folder 21:2

"Chapter 9: Ribosomes", Escherichia coli and Salmonella typhimurium [Noller] - Cellular and Molecular Biology, 2nd edition, Frederick C. Neidhardt, ed. 1995

box-folder 21:3

"Suppression of a Cold-sensitive Mutation in 16S rRNA by Overexpression of a Novel Ribosome Binding Factor, RbfA" [Dammel and Noller] - Genes and Development 1994-1995

box-folder 21:4

"Ribosomal Protein S17" [Heilek] 1995-1996

box-folder 21:5

"Specific Protection of 16 S rRNA by Translational Initiation Factors" [Moazed, Samaha, Gualerzi, and Noller] - Journal of Molecular Biology, v.248 1994-1995

box-folder 21:6

"Directed hydroxyl radical probing of the rRNA neighborhood of ribosomal protein S13 using tethered Fe(II)" [Heilek and Noller] - RNA, v.2, pp.597-602 1996

 

Box 22 [Figures, Manuscripts & Reprints] 1991-1999

Physical Description: 10 folders
box-folder 22:1-2

"A Dominant lethal mutation in 16S ribosomal RNA impairs EF-Tu-dependent binding of aminoacyl tRNA to ribosomes" [Powers and Noller] - Trends in Genetics 1991-1992

box-folder 22:1

[Manuscripts] 1991-1992

box-folder 22:2

[Photocopies of articles] 1991-1992

box-folder 22:3

"Ribosomes and Translation" [Green and Noller] [Corrected proofs] - Annual Reviews in Biochemistry, 1997, v.66, pp.679-716 1997

box-folder 22:4

"Computational Methods for Defining the Allowed confrontational Space of 16S rRNA based on Chemical Footprinting Data" [Fink, Chen, Noller, and Altman] - RNA, v.2, pp.851-866 1996

box-folder 22:5

"Ribosomal RNA" [Noller] [Manuscripts] - RNA Structure & Function 1998

box-folder 22:6

"The 530 Loop of 16S rRNA: A signal to EF-Tu?" [Powers and Noller] - Trends in Genetics 1993

box-folder 22:7

"Mapping the rRNA neighborhood of the acceptor end of tRNA in the ribosome" [Joseph and Noller] - The EMBO Journal, v.15 1996

box-folder 22:8

[30S Surface & 50S Surface Figures] [Merryman rRNA Surface] 1998

box-folder 22:9

"Guidelines for ASM Book Editors" re The Ribosome: Structure, Function, Antibiotics and Cellular Interactions, Noller, ed. 1998-1999

box-folder 22:10

[Anticodon loop figures] [Joseph tRNA - ASL hits] n.d.

 

Box 23 [Manuscripts, Notes & Reprints] 1977-1998

Physical Description: 7 folders
box-folder 23:1

"Chapter III: Hydroxyl radical probing the surface of 30S subunits" - Charles E. (Chuck) Merryman [Manuscript] n.d.

box-folder 23:2

"Directed hydroxyl radical probing of 16S rRNA using Fe(II) tethered to ribosomal protein S4" [Heilek, Marusak, Meares, and Noller] - Proceedings of the National Academy of Sciences, v.92, pp.1113-1116 [Reprint] 1994-1995

box-folder 23:3

"Probing the rRNA environment of ribosomal protein S5 across the subunit interface and inside the 30S subunit using tethered Fe(II)" [Culver, Heilek, and Noller] [for the Journal of Molecular Biology] 1998

box-folder 23:4

"Foot-printing and modification-interference analysis of binding sites on RNA" [Merryman and Noller] - Manuscript for Chris Smith, ed., RNA-Protein Interactions: A Practical Approach 1998

box-folder 23:5

[Blue Three-ring binder from 1979-80; notes] 1979-1980

box-folder 23:6

[Blue 3-ring binder from 1979; notes] "J. Kop: CW seq, NSV seq., AK T seq." 1979

box-folder 23:7

K23S - Rough; and Notes 1977

 

Box 24 [Notes] 1975-1986

Physical Description: 11 folders
box-folder 24:1

DNA Sequences n.d.

box-folder 24:2

OH K 30S -Rough n.d.

box-folder 24:3

"The Complete Nucleotide Sequence of a 16S Ribosomal RNA Gene from Escherichia coli" [Brosius, Palmer, Kennedy, and Noller] - (final) 1978

box-folder 24:4

16S RNA Gene Sequence n.d.

box-folder 24:5

"Affinity Labeling of Specific Regions of 23S RNA by Reaction of N-bromoacetyl-phenylalanyl-transfer RNA with Escherichia coli" [Breitmeyer and Noller] - for the Journal of Molecular Biology (23S) 1975

box-folder 24:6

"Functional Modification of 50S Ribosomal Subunits with Kethoxal" (50S/PT data Ginny/Rob) n.d.

box-folder 24:7

"Identification of Proteins Functionally Altered by Chemical Modification of the tRNA and Poly U Binding Sites of 30S Ribosomal Subunits" [paper by Thomas, Sweeney, Chang, and Noller] n.d.

box-folder 24:8

"The Complete Nucleotide Sequence of a 16S Ribosomal RNA Gene from Escherichia coli" Brosius et al. (rough) 1978

box-folder 24:9

K16S Sequences n.d.

box-folder 24:10

K23S Fragment Sequence n.d.

box-folder 24:11

Danesh - Old Stuff 1986

 

Box 25 [Notebooks & Photographs] 1969-1977

Physical Description: 11 folders
box-folder 25:1

Danesh - 30S Prep [?] - Notes 1983

box-folder 25:2

Original HYB Stats Diagram n.d.

box-folder 25:3

One-Hit 30S Photos 10-77 [8 8"x10" b/w] 1977

box-folder 25:4

K23S Prot[ein] Photos 10-77 1977

box-folder 25:5

"Notes on CSHSQB v.34 1969 Protein Synthesis" & "RIBS II June 1970 Condit" 1969-1970

box-folder 25:6

"Chaires" [Bio. 195, Spring '72] & "Chaires, Spring '72, Book II" 1972

box-folder 25:7

"Jim B, 368 Thimann" [Fall 1973 - Ribosome Research] & "Rosemary Sweeney V" [1974] 1973-1974

box-folder 25:8

"Rossum I" 1971

box-folder 25:9

"Brad Chaires, Bio 195, Winter 1972" 1972

box-folder 25:10

"The Relationship of African Apes, Man, and Old World Monkeys" (sic) [Lab Notes, Summer 1977] 1977

box-folder 25:11

"Science /Biology/ Please Save [Me]" [Class Notes] n.d.

 

Box 26 [Rolled material] n.d.

Physical Description: Various rolled items.
box 26

Secondary structure of Eubacterial 16S Ribosomal RNA - E. Coli; untitled models n.d.

 

Box 27 [Rolled material] n.d.

Physical Description: Various rolled items.
box 27

23S models & untitled models n.d.

 

Box 28 [Rolled material] n.d.

Physical Description: Various rolled items.
box 28

16S Mk 6 with LL & UR marked for overlays -digitizing; Mk II working copy & annotations n.d.

 

Box 29 [Rolled material] n.d.

Physical Description: Various rolled items.
box 29

Untitled models n.d.

 

Box 30 [Flat box] 1985-1987

Physical Description: 12" x 17.5" x 3.5"
reel 30:1

Tape of all Noller accts. on Wipke's vax incl. Tim's, Frodo stuff, etc. 1987

folder 30:2

Mito - misc. n.d.

folder 30:3

23S, Oct. 1985 1985

folder 30:4

Misc. material (models, printouts) n.d.

folder 30:5

Biographical material (Jazz posters, conference posters) n.d.

 

Box 31 [Flat box] n.d.

Physical Description: 20" x 24" x 1.5"
folder 31:1

Yeast 18S; Yeast 26S n.d.

folder 31:2

Rat 18S n.d.

folder 31:3

Brevis 16S; Stearo 23S n.d.

folder 31:4

Coli/DEO n.d.

folder 31:5

Coli 23S MKII, B. Stearo 23S n.d.

folder 31:6

Kingdom Schematics (4) n.d.

folder 31:7-8

Old Schematics - unidentified n.d.